SNP Profiles matching TSH 516

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 Key

 1234567891011121314
_Input profile
TTACACGGCTGGACCGAACTAAAGAACC
1._TSH_516
__ACGGCT_ACCGAACT__AA_
2._TSH_516
__ACGGCT_ACCGAACT__AA_
3._TSH_516
__ACGGCT_ACCGAACT__AA_
4._TSH_516
__ACGGCT_ACCGAACT__AA_
5._TSH_516
__ACGGCT_ACCGAACT__AA_
6._TSH_516
__ACGGCT_ACCGAACT__AA_
7._TSH_516
__ACGGCT_ACCGAACT__AA_
8._TSH_516
__ACGGCT_ACCGAACT__AA_
9._TSH_516
__ACGGCT_ACCGAACT__AA_
10._TSH_516
__ACGGCT_ACCGAACT__AA_
11._TSH_516
__ACGGCT_ACCGAACT__AA_
12._TSH_516
__ACGGCT_ACCGAACT__AA_
13._RUQ_1018
__ACGGCT_ACCGAACT__AA_
14._TSH_516
__ACGGCT_ACCGAACT__AA_
15._TSH_516
__ACGG__ACCGAACT__AA_
16._GC-08-208-6-04
TTACACGGCTGGACCGAACTAAAGAACG
17._GC-08-208-6-04
TTACACGGCTGGACCGAACTAAAGAACG
18._GC-08-208-6-04
TTACACGGCTGGACCGAACTAAAGAACG
19._GC-08-208-6-04
TTACACGGCTGGACCGAACTAAAGAACG
20._GC-08-208-6-04
TTACACGGCTGGACCGAACTAAAGAACG
21._GC-08-209-6-05
TTACACGGCTGGACCGAACTAAAGAACG
22._GC-08-209-6-05
TTACACGGCTGGACCGAACTAAAGAACG
23._GC-08-209-6-05
TTACACGGCTGGACCGAACTAAAGAACG
24._GC-08-209-6-05
TTACACGGCTGGACCGAACTAAAGAACG
25._GC-08-209-6-05
TTACACGGCTGGACCGAACTAAAGAACG
26._GC-08-209-6-05
TTACACGGCTGGACCGAACTAAAGAACG
27._GC-08-209-6-05
TTACACGGCTGGACCGAACTAAAGAACG
28._GC-08-208-6-04
TTACACGGCTGGACCGAACTAAAGAACG
29._GC-08-208-6-04
TTACACGG_GGACCGAACTAGAGAACG
30._EET_45_[ECU]
__ACGT__ACCCAACC__AA_
 1516171819202122232425262728
_Input profile
AGACCTGTGGACCCTTCTGTAGTTACCG
1._TSH_516
AGACCTGTCGAC_TT_GT___CG
2._TSH_516
AGACCTGTCGAC_TT_GT___CG
3._TSH_516
AGACCTGTCGAC_TT_GT___CG
4._TSH_516
AGACCTGTCGAC_TT_GT___CG
5._TSH_516
AGACCTGTCGAC_TT_GT___CG
6._TSH_516
AGACCTGTCGAC_TT_GT___CG
7._TSH_516
AGACCTGTCGAC_TT_GT___CG
8._TSH_516
AGACCTGTCGAC_TT_GT___CG
9._TSH_516
AGACCTGTCGAC_TT_GT___CG
10._TSH_516
AGACCTGTCGAC_TT_GT___CG
11._TSH_516
AGACCTGTCGAC_TT_GT___CG
12._TSH_516
AGACCTGTCGAC_TT_GT___CG
13._RUQ_1018
AGACCTGTCGAC_TT_GT___CG
14._TSH_516
AGACCTGTCGAC___GT___CG
15._TSH_516
AGACCTGTCG__TT_GT___CG
16._GC-08-208-6-04
AGACCTGTCGACCCTTCTGTAGTTACCG
17._GC-08-208-6-04
AGACCTGTCGACCCTTCTGTAGTTACCG
18._GC-08-208-6-04
AGACCTGTCGACCCTTCTGTAGTTACCG
19._GC-08-208-6-04
AGACCTGTCGACCCTTCTGTAGTTACCG
20._GC-08-208-6-04
AGACCTGTCGACCCTTCTGTAGTTACCG
21._GC-08-209-6-05
AGACCTGTCGACCCTTCTGTAGTTACCG
22._GC-08-209-6-05
AGACCTGTCGACCCTTCTGTAGTTACCG
23._GC-08-209-6-05
AGACCTGTCGACCCTTCTGTAGTTACCG
24._GC-08-209-6-05
AGACCTGTCGACCCTTCTGTAGTTACCG
25._GC-08-209-6-05
AGACCTGTCGACCCTTCTGTAGTTACCG
26._GC-08-209-6-05
AGACCTGTCGACCCTTCTGTAGTTACCG
27._GC-08-209-6-05
AGACCTGTCGACCCTTCTGTAGTTACCG
28._GC-08-208-6-04
AGACCTGTCGACCC_CTGTAGTTACCG
29._GC-08-208-6-04
AGACCTGTCG_CCTTCTGT_TTACCG
30._EET_45_[ECU]
AGACCTGTGGAC_TT_GG___CG
 293031323334353637383940  
_Input profile
CGAGCTGTAGATGTCTCTCTCGAGX_XX_X
1._TSH_516
_AGCT___GT__CTCGAGX_XX_X
2._TSH_516
_AGCT___GT__CTCGAGX_XX_X
3._TSH_516
_AGCT___GT__CTCGAGX_XX_X
4._TSH_516
_AGCT___GT__CTCGAGX_XX_X
5._TSH_516
_AGCT___GT__CTCGAGX_XX_X
6._TSH_516
_AGCT___GT__CTCGAGX_XX_X
7._TSH_516
_AGCT___GT__CTCGAGX_XX_X
8._TSH_516
_AGCT___GT__CTCGAGX_XX_X
9._TSH_516
_AGCT___GT__CTCGAGX_XX_X
10._TSH_516
_AGCT___GT__CTCGAGX_XX_X
11._TSH_516
_AGCT___GT__CTCGAGX_XX_X
12._TSH_516
_AGCT___GT__CTCGAGX_XX_X
13._RUQ_1018
_AGCT___GT__CTCGAGX_XX_X
14._TSH_516
_AGCT___GT__CTCGAGX_XX_X
15._TSH_516
_AGCT___GT__CTCGAGX_XX_X
16._GC-08-208-6-04
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
17._GC-08-208-6-04
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
18._GC-08-208-6-04
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
19._GC-08-208-6-04
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
20._GC-08-208-6-04
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
21._GC-08-209-6-05
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
22._GC-08-209-6-05
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
23._GC-08-209-6-05
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
24._GC-08-209-6-05
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
25._GC-08-209-6-05
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
26._GC-08-209-6-05
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
27._GC-08-209-6-05
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
28._GC-08-208-6-04
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
29._GC-08-208-6-04
CGAGCTGTAGATGTTTCTCTCGAGX_XX_X
30._EET_45_[ECU]
_AGCT___GT__CTCGAGX_XX_X

Input profile: TSH_516 RUQ_1018

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

3._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

4._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

5._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

6._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

7._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

8._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

9._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

10._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

11._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

12._TSH_516

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

13._TSH_516 RUQ_1018

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._TSH_516

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

15._TSH_516

97.6 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

16._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

19._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._TSH_516 GC-08-208-6-04

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

21._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

22._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

24._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

25._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

26._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

27._TSH_516 GC-08-209-6-05

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._TSH_516 GC-08-208-6-04

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._TSH_516 GC-08-208-6-04

94.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

30._EET_45_[ECU]

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP998
31TcSNP1060 32TcSNP1063 33TcSNP1111 34TcSNP1126 35TcSNP1253
36TcSNP1309 37TcSNP1439 38TcSNP1442 39TcSNP1458 40TcSNP1484